GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THYM | cis | rs9369898 | 1 | rs8589 | chr6:49403282 | CENPQ | chr6:49431096-49460820:+ | -0.29 | -5.57 | 2.36E-7 | Homocysteine levels |
| THYM | cis | rs10461617 | 1 | rs860580 | chr5:56149429 | C5orf35 | chr5:56205103-56213010:+ | -0.77 | -9.59 | 1.25E-15 | Type 2 diabetes |
| THYM | cis | rs10461617 | 1 | rs861283 | chr5:56184610 | C5orf35 | chr5:56205103-56213010:+ | 0.75 | 9.04 | 1.84E-14 | Type 2 diabetes |
| THYM | cis | rs10461617 | 1 | rs863840 | chr5:56128999 | C5orf35 | chr5:56205103-56213010:+ | 0.75 | 9.04 | 1.84E-14 | Type 2 diabetes |
| THYM | cis | rs10461617 | 1 | rs866222 | chr5:56184444 | C5orf35 | chr5:56205103-56213010:+ | 0.75 | 9.04 | 1.84E-14 | Type 2 diabetes |
| THYM | cis | rs1401999 | 1 | rs869417 | chr3:183689138 | ABCC5 | chr3:183637726-183735727:- | 0.48 | 4.28 | 4.53E-5 | Anterior chamber depth |
| THYM | cis | rs2066819 | 1 | rs871130 | chr12:56648777 | RPS26 | chr12:56435686-56438005:+ | 0.82 | 4.27 | 4.62E-5 | Psoriasis vulgaris |
| THYM | cis | rs2130392 | 1 | rs873686 | chr4:185638876 | CCDC111 | chr4:185570767-185616112:+ | -0.33 | -4.18 | 6.38E-5 | Kawasaki disease |
| THYM | cis | rs2130392 | 1 | rs873686 | chr4:185638876 | MLF1IP | chr4:185615220-185655286:- | 0.34 | 7.62 | 1.89E-11 | Kawasaki disease |
| THYM | cis | rs877636 | 1 | rs877636 | chr12:56480583 | RPS26 | chr12:56435686-56438005:+ | -0.96 | -10.13 | 8.8E-17 | Cognitive function |
| THYM | cis | rs881375 | 1 | rs881375 | chr9:123652898 | LOC253039 | chr9:123605320-123616644:+ | -0.62 | -5.56 | 2.51E-7 | Rheumatoid arthritis |
| THYM | cis | rs4660306 | 1 | rs882803 | chr1:45976147 | CCDC163P | chr1:45960581-45965646:- | -0.8 | -13.18 | 3.67E-23 | Homocysteine levels |
| THYM | cis | rs1577917 | 1 | rs884841 | chr6:86680300 | SNHG5 | chr6:86386726-86388451:- | -0.56 | -6.75 | 1.15E-9 | Response to antipsychotic treatment |
| THYM | cis | rs2564921 | 1 | rs891368 | chr3:53123273 | RFT1 | chr3:53122503-53164470:- | -0.44 | -4.93 | 3.42E-6 | Height |
| THYM | cis | rs9876781 | 1 | rs898225 | chr3:48413179 | TREX1 | chr3:48501186-48509043:+ | 0.28 | 4.42 | 2.62E-5 | Longevity |